Page Comparison

List of things we want to include

TODOs

1. Adding steps about the tools and installing those tools ( rawtherapee, mobaxterm)

2. Steps in rawtherapee

3. Command line instructions

4. Pics or screenshots will be very helpful

   1. Provide video overview

5. Requirements

   1. How to get requirements

6. Additional requirements and instructions

   1. Azure Matt

   2. SUNNY Matt

   3. NFS Locker Access Chris?

Backlog Spreadsheet:

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ls /mnt/research-projects/s/screberg/longterm_images2/semifield-developed-images/<batch>/images/*.pp3 | wc -l

And compare to the number of arws using this:

ls /mnt/research-projects/s/screberg/longterm_images2/semifield-upload/<batch>/*.ARW | wc -l

As long as the output number we get from each of these commands are equivalent, we know we have successfully applied the color profile to every image in the batch.

If the number of jps and pp3s are not equivalent to the original number of images, try running the pipeline again within the screen. Double check the name of the batch that was typed in, this is where errors are likely to happen. Also, be sure to be navigated to the Semifield folder. If we are within the Field folder, the pipeline will not be successful.

5. Update Backlog Spreadsheet

Change the progress column to the appropriate term to indicate where that batch is in the process. Make any notes/check box when done, if applicable.

When entire batch is fully completed, the row can be hidden by right clicking on the row number, then click hide.

4. Blob Analyzer

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4.1 Installing conda (miniconda) 

Use these commands below from the command line in the SUNNY server:

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Close the remote connection, then SSH back in

4.2 Setting up a conda environment

Still in the command line inside of SUNNY:

conda create -n <your env name> python=3.10
conda activate <your env name>
cd /home/psa_images/analyze_blobs
pip install -r requirements.txt

4.3 Running the code 

Your conda environment must be activated to run the code.

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