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SUNNY/Read, Write Privileges
Via Matthew Kutugata
NCSU Storage Lockers
Via Mikah Pinegar or Chris Reberg-Horton
Azure Storage Explorer
Via Matthew Kutugata or Mikah Pinegar
Divided backlog Google Sheets
Via Matthew Kutugata or Courtney Belcher
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| Info |
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Contact through Slack to obtain permissions |
2. Establishing VPN:
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Be sure Download and Launch Cisco Secure Client is downloaded.
Launch program
Choose the NCSU VPN - “vpn.ncsu.edu”.
Click “Connect”.
Enter usernameUsername, passwordPassword, and “push”, “sms”, or “passcode” to authenticate via Duo.
Once authenticated, log Log into the SUNNY server via MobaXTerm.
3. MobaXTerm (MXT):
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3.1 Log into MXT
Open programChoose , choose Light/Dark mode.
Click Start “Start local terminalterminal”.
Log into user.
Code Block ssh <user>@SUNNY.ece.ncsu.edu
Enter password if prompted.
Password is not displayed while entering. If incorrect, you will be repromoted to enter password.
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| Code Block |
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cd .. |
| Code Block |
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cd psa_images |
From here - for preprocessing purposes - choose Choose to go to either the Semifield or Field folder using the respective command:
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| Code Block |
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cd field_tools |
From here, lots a user can be done:
“download” Download Field batches
“copy” Copy Semifield batches
Open new screens
Launch RawTherapee to create color profiles
Send batches into their respective pipelines
Check available batches
Check/Crosscheck # of images, jpgs, arws, pp3s, etc.
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It can be easy to get mixed up when working on Semifield and Field batches. Mix-ups will lead to errors and frustrations, so it is important to stay organized, work slowly, and sit down knowing what to focus on in this preprocessing session. This takes time and practice. Don’t forget to take breaks.
4.1 The Semifield
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An area of partially controlled plant growth, yielding higher individual plant image count using the BenchBot. Contains white markers with black QR Codes and a black background. Filled with Comprised of black pots, potting soil and plants (depending on what growth stage they are in), target species and non-target species.
Semifield batches are usually larger than Field batches.
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4.2 The Field
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Naturally growing plants found and identified by field tech teams. Documented with Individuals are documented using a monopod setup. Background includes gray mat setup with images boundaries sometimes consisting of other, non-target plants. Field batches are usually smaller than Semifield batches.
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Backlog Spreadsheet:
| Lref gdrive file | ||
|---|---|---|
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Semifield: Ignore batches under 50 images
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Filling out each column respectively is important
Hiding Developed batches' rows helps keep organized
Color coded format also helps keep organized
Downloaded - Field batch has been brought over to local user
Downloading - field batch is in the process of being brought to local user
Copied - Semifield batch has been brought over to local user
Copying - Semifield batch is in the process of being brought to local user
Processed Profiled - Batch has been opened within RawTherapee and settings have been toggled appropriately
Processing - Batch has been sent into it’s respective pipeline
Redo - Must redownload/copy batch again, adjust profile again, then send back into pipeline
Revisit - Something seems to have gone wrong in the pipeline. Errors have been given. Must investigate. Image count does not match up, no storage remains, etc.
Developed - Batch has been sent through pipeline successfully. Image count matches
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.