List of things we want to include
TODOs
Adding steps about the tools and installing those tools ( rawtherapee, mobaxterm)
Steps in rawtherapee
Command line instructions
Pics or screenshots will be very helpful
Provide video overview
Requirements
How to get requirements
Additional requirements and instructions
Azure
SUNNY
NFS Locker Access
1. Download Batch
Description of this step
code snippet here
2. Color Profiling
Description of step
2.1 Sub heading step
Backlog Spreadsheet:
Common & Useful Commands
Available batches:
ls /mnt/research-projects/s/screberg/longterm_images2/semifield-upload/ -lh
# of images in batch:
ls /mnt/research-projects/s/screberg/longterm_images2/semifield-upload/<batch>/*.ARW | wc -l
# of jpgs processed:
ls /mnt/research-projects/s/screberg/longterm_images2/semifield-developed-images/<batch>/images/*.jpg | wc -l
# of pp3 files created:
ls /mnt/research-projects/s/screberg/longterm_images2/semifield-developed-images/<batch>/images/*.pp3 | wc -l
Blob Analyzer
Installing conda (miniconda)
Use these commands below from the command line in the SUNNY server:
mkdir -p ~/miniconda3
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O ~/miniconda3/miniconda.sh
bash ~/miniconda3/miniconda.sh -b -u -p ~/miniconda3
rm ~/miniconda3/miniconda.sh
~/miniconda3/bin/conda init bash
Close the remote connection then ssh back in
Setting up a conda environment
Still in the command line inside of SUNNY:
conda create -n <your env name> python=3.10
conda activate <your env name>
cd /home/psa_images/analyze_blobs
pip install -r requirements.txt
Running the code
Your conda environment must be activated to run the code. Run these in the command line.
conda activate <your env name>
cd /home/psa_images/analyze_blobs
python ANALYZE_BLOB.py
Creates 2 time stamped files in the “results” folder in the main project directory.
A text files that provides a general summary of missing batches
A csv file that can be viewed in excel or google docs
0 Comments