Species Information

How species are being codified.
Found in SemiF-AnnotationPipeline/data/semifield-utils/species_inf.json
{
    "species": {
        "AMPA": {
            "scientific_name": "Amaranthus palmeri",
            "common_name": "Palmer amaranth",
            "USDA_symbol": "AMPA",
            "EPPO": "AMAPA",
            "authority": "Watson",
            "collection_location": "NC",
            "polygon_id": ""
        },
        "AMAR2": {
            "scientific_name": "Ambrosia artemisiifolia",
            "common_name": "Common ragweed",
            "USDA_symbol": "AMAR2",
            "EPPO": "AMBEL",
            "authority": "Linnaeus",
            "collection_location": "NC",
            "polygon_id": ""
        },
        "SEOB4": {
            "scientific_name": "Senna obtusifolia",
            "common_name": "Sicklepod",
            "USDA_symbol": "SEOB4",
            "EPPO": "CASOB",
            "authority": "(Linnaeus) Irwin and Barneby",
            "collection_location": "NC",
            "polygon_id": ""
        },
        "XAST": {
            "scientific_name": "Xanthium strumarium",
            "common_name": "Cocklebur",
            "USDA_symbol": "XAST",
            "EPPO": "XANST",
            "authority": "Linnaeus",
            "collection_location": "NC",
            "polygon_id": ""
        },
        "DISA": {
            "scientific_name": "Digitaria sanguinalis",
            "common_name": "Large crabgrass",
            "USDA_symbol": "DISA",
            "EPPO": "DIGSA",
            "authority": "(Linnaeus) Scopoli",
            "collection_location": "NC",
            "polygon_id": ""
        },
        "ELIN3": {
            "scientific_name": "Eleusine indica",
            "common_name": "Goosegrass",
            "USDA_symbol": "ELIN3",
            "EPPO": "ELEIN",
            "authority": "(Linnaeus) Gärtner",
            "collection_location": "NC",
            "polygon_id": ""
        },
        "URPL2": {
            "scientific_name": "Urochloa platyphylla",
            "common_name": "Broadleaf signalgrass",
            "USDA_symbol": "URPL2",
            "EPPO": "BRAPP",
            "authority": "(Munro ex C. Wright) R.D. Webster",
            "collection_location": "NC",
            "polygon_id": ""
        },
        "CYRO": {
            "scientific_name": "Cyperus rotundus",
            "common_name": "Purple nutsedge",
            "USDA_symbol": "CYRO",
            "EPPO": "CYPRO",
            "authority": "Linnaeus",
            "collection_location": "NC",
            "polygon_id": ""
        },
        "AMTU": {
            "scientific_name": "Amaranthus tuberculatus",
            "common_name": "Waterhemp",
            "USDA_symbol": "AMTU",
            "EPPO": "AMATU",
            "authority": "(Moquin-Tandon) Sauer",
            "collection_location": "NC",
            "polygon_id": ""
        },
        "ECCR": {
            "scientific_name": "Echinochloa crus-galli",
            "common_name": "Barnyardgrass",
            "USDA_symbol": "ECCR",
            "EPPO": "ECHCG",
            "authority": "(Linnaeus) Palisot de Beauvois ",
            "collection_location": "NC",
            "polygon_id": ""
        },
        "ECCO2": {
            "scientific_name": "Echinochloa colona",
            "common_name": "Jungle rice",
            "USDA_symbol": "ECCO2",
            "EPPO": "ECHCO",
            "authority": "(Linnaeus) Link",
            "collection_location": "NC",
            "polygon_id": ""
        },
        "URTE2": {
            "scientific_name": "Urochloa texana",
            "common_name": "Texas millet",
            "USDA_symbol": "URTE2",
            "EPPO": "PANTE",
            "authority": "(Buckley) Webster",
            "collection_location": "NC",
            "polygon_id": ""
        },
        "BASC5": {
            "scientific_name": "Bassia scoparia",
            "common_name": "Kochia",
            "USDA_symbol": "BASC5",
            "EPPO": "KCHSC",
            "authority": "(Linnaeus) Scott",
            "collection_location": "NC",
            "polygon_id": ""
        },
        "HEAN3": {
            "scientific_name": "Helianthus annuus",
            "common_name": "Common sunflower",
            "USDA_symbol": "HEAN3",
            "EPPO": "HELAN",
            "authority": "Linnaeus",
            "collection_location": "NC",
            "polygon_id": ""
        },
        "PAHY": {
            "scientific_name": "Parthenium hysterophorus",
            "common_name": "Ragweed parthenium",
            "USDA_symbol": "PAHY",
            "EPPO": "PTNHY",
            "authority": "Linnaeus",
            "collection_location": "NC",
            "polygon_id": ""
        },
        "SOHA": {
            "scientific_name": "Sorghum halepense",
            "common_name": "Johnsongrass",
            "USDA_symbol": "SOHA",
            "EPPO": "SORHA",
            "authority": "(Linnaeus) Persoon",
            "collection_location": "NC",
            "polygon_id": ""
        },
        "GLMA4": {
            "scientific_name": "Glycine max",
            "common_name": "Soybean",
            "USDA_symbol": "GLMA4",
            "EPPO": " GLXMA",
            "authority": "(Linnaeus) Merrill",
            "collection_location": "NC",
            "polygon_id": ""
        },
        "AMHY": {
            "scientific_name": "Amaranthus hybridus",
            "common_name": "Smooth pigweed",
            "USDA_symbol": "AMHY",
            "EPPO": "AMACH",
            "authority": "Linnaeus",
            "collection_location": "MD",
            "polygon_id": ""
        },
        "CHAL7": {
            "scientific_name": "Chenopodium album",
            "common_name": "Common lambsquarters",
            "USDA_symbol": "CHAL7",
            "EPPO": "CHEAL",
            "authority": "Linnaeus",
            "collection_location": "MD",
            "polygon_id": ""
        },
        "PADI": {
            "scientific_name": "Panicum dichotomiflorum",
            "common_name": "Fall panicum",
            "USDA_symbol": "PADI",
            "EPPO": "PANDI",
            "authority": "Michaux",
            "collection_location": "MD",
            "polygon_id": ""
        },
        "DAST": {
            "scientific_name": "Datura stramonium",
            "common_name": "Jimson weed",
            "USDA_symbol": "DAST",
            "EPPO": "DATST",
            "authority": "Linnaeus",
            "collection_location": "MD",
            "polygon_id": ""
        },
        "ABTH": {
            "scientific_name": "Abutilon theophrasti",
            "common_name": "Velvetleaf",
            "USDA_symbol": "ABTH",
            "EPPO": "ABUTH",
            "authority": "Medicus",
            "collection_location": "MD",
            "polygon_id": ""
        },
        "SEPU8": {
            "scientific_name": "Setaria pumila",
            "common_name": "Yellow foxtail",
            "USDA_symbol": "SEPU8",
            "EPPO": "SETPU",
            "authority": "(C. Linnaeus) Romer and Schultes ",
            "collection_location": "MD",
            "polygon_id": ""
        },
        "SEFA": {
            "scientific_name": "Setaria faberi",
            "common_name": "Giant foxtail",
            "USDA_symbol": "SEFA",
            "EPPO": "SETFA",
            "authority": "Herrmann",
            "collection_location": "MD",
            "polygon_id": ""
        },
        "ERCA20": {
            "scientific_name": "Erigeron canadensis",
            "common_name": "Horseweed",
            "USDA_symbol": "ERCA20",
            "EPPO": "ERICA",
            "authority": "Linnaeus",
            "collection_location": "MD",
            "polygon_id": ""
        },
        "ZEA": {
            "scientific_name": "Zea mays",
            "common_name": "Maize",
            "USDA_symbol": "ZEA",
            "EPPO": "  ZEAMX",
            "authority": "Linnaeus",
            "collection_location": "MD",
            "polygon_id": ""
        }
    },
    "Notes": {
        "1": "USDA symbols are used as species index key.",
        "2": "When difference between USDA and EPPO codes, scientific_names, or authority occured, USDA information was used.",
        "3": "Purple nutsedge (CYRO) is used by may also be yellow nutsedge (CYES).",
        "4": "North Carolina (MD), Texas (TX), Maryland (MD)"
    },
    "Version": "1.1"
}
SemiField Annotation Pipeline

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